1. Can not find hdf5.h

Solution:

--- INCLUDE) /usr/local/INCLUDE_DIRS := $(PYTHON_include /usr/include/hdf5/serial/

+++ INCLUDE) /usr/local/include/hdf5/serial/

--- LIBRARIES += glog gflags protobuf boost_system boost_filesystem m hdf5_hl hdf5
+++ LIBRARIES += glog gflags protobuf boost_system boost_filesystem m hdf5_serial_hl hdf5_serial

Caffe Installation Problems